miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|19152086|gb|BM816079.1|BM816079 CCCGGGCTGCAGGAATTCGGCACGAGGACAGCGGAGAAGGTTGGGAAAAATGAGGCGGGAACTTTCTGTTCTCTACAGCC
GCTTTTATGGCATTCTTTTGGGAGGAATCCTTCTGATGTATGAGTTGCACAATTTCTTGCGCCTGCTTCTTTTCCTGATG
TACTCCTTTTGGATTCCTCAAATTGTCATGAATGTCATCCGGGATACAAGAAAACCACTGCACCCTCAATATATTTTAGG
CATGACTGCTATCCGTGTAGCCATCCCGCTATATATATTTGGTTGTCCTAGCAACTTCATGCGCATTGAGCCCGACAAGA
AATGGTGCATAGCTGTGACAACGTTCATGGGTATCCAAGCAGCTGTGCTGCTCCTCCAGCACTATCTTGGTTCTCGCTGC
TTTATTCCTCACCAGATCCTCCCTGAGAAATACTGCTACCACAGGAAGGTAGAGGATAACACAAATCAGCCCATTGATTG
TGTAATCTGCATGACCACAATTGATCTTTCCCAAAGAGCAAGTGAATACATGGTGGCACCGTGTGAACATATATTCCACT
CGGGCTGTTTACAACGCTGGATGGACATCAAGATGGAGTGCCCAACTTGCAGGCGCTCTCTACCACCAGCTTAGAGGAGC
AATCCTATGTACTCCCTCCGTANACAATATAAGAGCGTTTAGATACTAAAGTAATGATCTANACACTCTTATATTTCTTT
ACAGAGGGAGTANCATATATAGTTTACAAGGAAGTANGTAGCCCAGCGAAAGTGCTTATATCCCCATCTTCCCATCCACA
TCCGTCGAGATTCTCAGATATTCTCGCCTCCCCATGTATACTTGGCCGTNTTAAATGGTTGGATTTTGAACCTGCT




Most similar to sp|P36096|TUL1_YEAST

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1
            OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
            GN=TUL1 PE=1 SV=1
          Length = 758

 Score =  108 bits (270), Expect = 5e-23
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 36/191 (18%)
 Frame = +2

Query: 164  SFWIPQIVMNVIR------------------DTRKPLHPQYILGMTAIRVAIPLYIFGCP 289
            S+WIPQI  N ++                    + PL   +++G T IR    +Y+F   
Sbjct: 567  SYWIPQIFRNAVKGIPSRRERARSSIGGNRSQNKMPLLWSFVIGTTIIRSLPVVYVFTYS 626

Query: 290  SNFMRIEPDKKWCIAVTTFMGIQAAVLLLQHYLGSRCFIPHQILPEKYCYHRKVEDN--- 460
            SN  R   D  + + ++ ++  Q ++L  Q  LGSR F+P   +P+ Y Y + + +    
Sbjct: 627  SNVFRHHKDVHFVVFLSLWLLFQISILYSQDVLGSRWFLPKHTIPDGYSYFKPLSNEYIS 686

Query: 461  ------TNQPIDCVICMTTIDL---------SQRASEYMVAPCEHIFHSGCLQRWMDIKM 595
                      +DC ICM+ + +               YMV PC H+FH+ CL+ WM+ K+
Sbjct: 687  EHGGGTAEHTVDCAICMSDVPIYIEEIPETHKVDQHSYMVTPCNHVFHTSCLENWMNYKL 746

Query: 596  ECPTCRRSLPP 628
            +CP CR  LPP
Sbjct: 747  QCPVCRSPLPP 757